Detailed information of SNP:
|
SNP ID:
sf1126056125(Gbrowse)
Chromosome: chr11 Position: 26056125 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 51.91% | 48.09% |
| All Indica | 796 | 47.99% | 52.01% |
| All Japonica | 497 | 61.57% | 38.43% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 374 | 48.13% | 51.87% |
| Indica II | 212 | 32.55% | 67.45% |
| Indica Intermediate | 210 | 63.33% | 36.67% |
| Temperate Japonica | 335 | 78.21% | 21.79% |
| Tropical Japonica | 94 | 28.72% | 71.28% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126056125 | G->A | LOC_Os11g43934(LOC_Os11g43934.2) | INTRON |
| sf1126056125 | G->A | LOC_Os11g43934(LOC_Os11g43934.1) | UTR_3_PRIME |