Detailed information of SNP:
|
SNP ID:
sf1126059441(Gbrowse)
Chromosome: chr11 Position: 26059441 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1365 | 83.15% | 16.85% |
| All Indica | 758 | 81.79% | 18.21% |
| All Japonica | 492 | 83.94% | 16.06% |
| Aus | 63 | 96.83% | 3.17% |
| Indica I | 350 | 72.57% | 27.43% |
| Indica II | 208 | 87.98% | 12.02% |
| Indica Intermediate | 200 | 91.50% | 8.50% |
| Temperate Japonica | 332 | 78.01% | 21.99% |
| Tropical Japonica | 93 | 95.70% | 4.30% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 71.05% | 28.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126059441 | G->C | INTERGENIC | None |