Detailed information of SNP:
|
SNP ID:
sf1126059459(Gbrowse)
Chromosome: chr11 Position: 26059459 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1366 | 82.36% | 17.64% |
| All Indica | 758 | 80.74% | 19.26% |
| All Japonica | 493 | 83.77% | 16.23% |
| Aus | 62 | 96.77% | 3.23% |
| Indica I | 351 | 70.66% | 29.34% |
| Indica II | 209 | 87.56% | 12.44% |
| Indica Intermediate | 198 | 91.41% | 8.59% |
| Temperate Japonica | 332 | 78.01% | 21.99% |
| Tropical Japonica | 93 | 95.70% | 4.30% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126059459 | A->G | INTERGENIC | None |