Detailed information of SNP:
|
SNP ID:
sf1126060092(Gbrowse)
Chromosome: chr11 Position: 26060092 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 75.48% | 24.52% |
| All Indica | 795 | 70.19% | 29.81% |
| All Japonica | 497 | 82.70% | 17.30% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 373 | 56.03% | 43.97% |
| Indica II | 211 | 83.41% | 16.59% |
| Indica Intermediate | 211 | 81.99% | 18.01% |
| Temperate Japonica | 335 | 76.42% | 23.58% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126060092 | A->T | INTERGENIC | None |