Detailed information of SNP:
|
SNP ID:
sf1126094352(Gbrowse)
Chromosome: chr11 Position: 26094352 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 86.75% | 13.25% |
| All Indica | 791 | 81.80% | 18.20% |
| All Japonica | 497 | 95.57% | 4.43% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 372 | 96.24% | 3.76% |
| Indica II | 212 | 82.08% | 17.92% |
| Indica Intermediate | 207 | 55.56% | 44.44% |
| Temperate Japonica | 335 | 96.12% | 3.88% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126094352 | T->C | INTERGENIC | None |