Detailed information of SNP:
|
SNP ID:
sf1126099639(Gbrowse)
Chromosome: chr11 Position: 26099639 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 67.54% | 32.46% |
| All Indica | 798 | 45.74% | 54.26% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 374 | 19.25% | 80.75% |
| Indica II | 213 | 75.59% | 24.41% |
| Indica Intermediate | 211 | 62.56% | 37.44% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126099639 | G->T | INTERGENIC | None |