Detailed information of SNP:
|
SNP ID:
sf1126104559(Gbrowse)
Chromosome: chr11 Position: 26104559 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 74.56% | 25.44% |
| All Indica | 799 | 71.34% | 28.66% |
| All Japonica | 497 | 80.48% | 19.52% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 375 | 61.87% | 38.13% |
| Indica II | 213 | 83.57% | 16.43% |
| Indica Intermediate | 211 | 75.83% | 24.17% |
| Temperate Japonica | 335 | 79.10% | 20.90% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126104559 | A->G | INTERGENIC | None |