Detailed information of SNP:
|
SNP ID:
sf1126111507(Gbrowse)
Chromosome: chr11 Position: 26111507 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1392 | 73.13% | 26.87% |
| All Indica | 781 | 58.51% | 41.49% |
| All Japonica | 491 | 92.87% | 7.13% |
| Aus | 64 | 82.81% | 17.19% |
| Indica I | 367 | 47.41% | 52.59% |
| Indica II | 212 | 76.42% | 23.58% |
| Indica Intermediate | 202 | 59.90% | 40.10% |
| Temperate Japonica | 332 | 92.77% | 7.23% |
| Tropical Japonica | 93 | 91.40% | 8.60% |
| Japonica Intermediate | 66 | 95.45% | 4.55% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126111507 | T->C | INTERGENIC | None |