Detailed information of SNP:
|
SNP ID:
sf1126111521(Gbrowse)
Chromosome: chr11 Position: 26111521 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 56.66% | 43.34% |
| All Indica | 792 | 63.64% | 36.36% |
| All Japonica | 497 | 42.05% | 57.95% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 369 | 61.25% | 38.75% |
| Indica II | 213 | 78.87% | 21.13% |
| Indica Intermediate | 210 | 52.38% | 47.62% |
| Temperate Japonica | 335 | 25.97% | 74.03% |
| Tropical Japonica | 94 | 76.60% | 23.40% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126111521 | C->T | INTERGENIC | None |