Detailed information of SNP:
|
SNP ID:
sf1126111909(Gbrowse)
Chromosome: chr11 Position: 26111909 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1318 | 80.12% | 19.88% |
| All Indica | 732 | 83.33% | 16.67% |
| All Japonica | 472 | 81.14% | 18.86% |
| Aus | 60 | 53.33% | 46.67% |
| Indica I | 365 | 95.07% | 4.93% |
| Indica II | 185 | 56.76% | 43.24% |
| Indica Intermediate | 182 | 86.81% | 13.19% |
| Temperate Japonica | 325 | 90.46% | 9.54% |
| Tropical Japonica | 84 | 59.52% | 40.48% |
| Japonica Intermediate | 63 | 61.90% | 38.10% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126111909 | T->C | INTERGENIC | None |