Detailed information of SNP:
|
SNP ID:
sf1126112486(Gbrowse)
Chromosome: chr11 Position: 26112486 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 86.94% | 13.06% |
| All Indica | 797 | 79.05% | 20.95% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 373 | 70.51% | 29.49% |
| Indica II | 213 | 83.57% | 16.43% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126112486 | G->A | LOC_Os11g44000(LOC_Os11g44000.1) | Synonymous |