Detailed information of SNP:
|
SNP ID:
sf1126114066(Gbrowse)
Chromosome: chr11 Position: 26114066 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 58.70% | 41.30% |
| All Indica | 794 | 66.37% | 33.63% |
| All Japonica | 497 | 43.46% | 56.54% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 370 | 58.65% | 41.35% |
| Indica II | 213 | 79.81% | 20.19% |
| Indica Intermediate | 211 | 66.35% | 33.65% |
| Temperate Japonica | 335 | 26.87% | 73.13% |
| Tropical Japonica | 94 | 77.66% | 22.34% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126114066 | T->C | LOC_Os11g44000(LOC_Os11g44000.1) | INTRON |