Detailed information of SNP:
|
SNP ID:
sf1126114292(Gbrowse)
Chromosome: chr11 Position: 26114292 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 59.28% | 40.72% |
| All Indica | 795 | 67.55% | 32.45% |
| All Japonica | 497 | 43.46% | 56.54% |
| Aus | 65 | 72.31% | 27.69% |
| Indica I | 372 | 60.22% | 39.78% |
| Indica II | 213 | 79.81% | 20.19% |
| Indica Intermediate | 210 | 68.10% | 31.90% |
| Temperate Japonica | 335 | 26.87% | 73.13% |
| Tropical Japonica | 94 | 77.66% | 22.34% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126114292 | A->G | LOC_Os11g44000(LOC_Os11g44000.1) | INTRON |