Detailed information of SNP:
|
SNP ID:
sf1126114520(Gbrowse)
Chromosome: chr11 Position: 26114520 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 87.00% | 13.00% |
| All Indica | 790 | 79.37% | 20.63% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 66 | 83.33% | 16.67% |
| Indica I | 373 | 71.85% | 28.15% |
| Indica II | 206 | 83.01% | 16.99% |
| Indica Intermediate | 211 | 89.10% | 10.90% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126114520 | C->T | LOC_Os11g44000(LOC_Os11g44000.1) | INTRON |