Detailed information of SNP:
|
SNP ID:
sf1126115175(Gbrowse)
Chromosome: chr11 Position: 26115175 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1408 | 84.94% | 15.06% |
| All Indica | 789 | 75.54% | 24.46% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 83.33% | 16.67% |
| Indica I | 374 | 69.52% | 30.48% |
| Indica II | 210 | 83.33% | 16.67% |
| Indica Intermediate | 205 | 78.54% | 21.46% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126115175 | T->C | INTERGENIC | None |