Detailed information of SNP:
|
SNP ID:
sf1126131586(Gbrowse)
Chromosome: chr11 Position: 26131586 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1381 | 97.68% | 2.32% |
| All Indica | 785 | 97.58% | 2.42% |
| All Japonica | 477 | 97.69% | 2.31% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 374 | 98.40% | 1.60% |
| Indica II | 206 | 96.60% | 3.40% |
| Indica Intermediate | 205 | 97.07% | 2.93% |
| Temperate Japonica | 326 | 98.77% | 1.23% |
| Tropical Japonica | 85 | 91.76% | 8.24% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126131586 | A->T | INTERGENIC | None |