Detailed information of SNP:
|
SNP ID:
sf1126140914(Gbrowse)
Chromosome: chr11 Position: 26140914 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 56.96% | 43.04% |
| All Indica | 793 | 36.07% | 63.93% |
| All Japonica | 494 | 91.90% | 8.10% |
| Aus | 65 | 46.15% | 53.85% |
| Indica I | 373 | 19.30% | 80.70% |
| Indica II | 210 | 45.71% | 54.29% |
| Indica Intermediate | 210 | 56.19% | 43.81% |
| Temperate Japonica | 334 | 95.51% | 4.49% |
| Tropical Japonica | 92 | 85.87% | 14.13% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126140914 | C->T | LOC_Os11g44030(LOC_Os11g44030.1) | Non-Synonymous SNP |