Detailed information of SNP:
|
SNP ID:
sf1126169741(Gbrowse)
Chromosome: chr11 Position: 26169741 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 75.11% | 24.89% |
| All Indica | 796 | 93.72% | 6.28% |
| All Japonica | 497 | 39.64% | 60.36% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 94.92% | 5.08% |
| Indica II | 212 | 94.34% | 5.66% |
| Indica Intermediate | 210 | 90.95% | 9.05% |
| Temperate Japonica | 335 | 27.16% | 72.84% |
| Tropical Japonica | 94 | 65.96% | 34.04% |
| Japonica Intermediate | 68 | 64.71% | 35.29% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126169741 | C->G | LOC_Os11g44110(LOC_Os11g44110.1) | Non-Synonymous SNP |