Detailed information of SNP:
|
SNP ID:
sf1126173836(Gbrowse)
Chromosome: chr11 Position: 26173836 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1395 | 97.71% | 2.29% |
| All Indica | 777 | 97.81% | 2.19% |
| All Japonica | 496 | 97.98% | 2.02% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 99.20% | 0.80% |
| Indica II | 197 | 93.40% | 6.60% |
| Indica Intermediate | 206 | 99.51% | 0.49% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126173836 | C->G | LOC_Os11g44130(LOC_Os11g44130.1) | Non-Synonymous SNP |