Detailed information of SNP:
|
SNP ID:
sf1126179545(Gbrowse)
Chromosome: chr11 Position: 26179545 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1401 | 96.72% | 3.28% |
| All Indica | 785 | 97.07% | 2.93% |
| All Japonica | 495 | 96.77% | 3.23% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 366 | 96.99% | 3.01% |
| Indica II | 210 | 97.14% | 2.86% |
| Indica Intermediate | 209 | 97.13% | 2.87% |
| Temperate Japonica | 334 | 96.11% | 3.89% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126179545 | T->C | INTERGENIC | None |