Detailed information of SNP:
|
SNP ID:
sf1126222763(Gbrowse)
Chromosome: chr11 Position: 26222763 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1297 | 86.12% | 13.88% |
| All Indica | 741 | 87.18% | 12.82% |
| All Japonica | 452 | 85.84% | 14.16% |
| Aus | 57 | 80.70% | 19.30% |
| Indica I | 337 | 86.35% | 13.65% |
| Indica II | 202 | 86.14% | 13.86% |
| Indica Intermediate | 202 | 89.60% | 10.40% |
| Temperate Japonica | 312 | 90.06% | 9.94% |
| Tropical Japonica | 83 | 73.49% | 26.51% |
| Japonica Intermediate | 57 | 80.70% | 19.30% |
| Group VI/Aromatic | 12 | 66.67% | 33.33% |
| Intermediate | 35 | 82.86% | 17.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126222763 | T->C | INTERGENIC | None |