Detailed information of SNP:
|
SNP ID:
sf1126280422(Gbrowse)
Chromosome: chr11 Position: 26280422 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1326 | 51.21% | 48.79% |
| All Indica | 732 | 57.24% | 42.76% |
| All Japonica | 479 | 37.79% | 62.21% |
| Aus | 63 | 71.43% | 28.57% |
| Indica I | 355 | 57.18% | 42.82% |
| Indica II | 186 | 63.98% | 36.02% |
| Indica Intermediate | 191 | 50.79% | 49.21% |
| Temperate Japonica | 328 | 27.13% | 72.87% |
| Tropical Japonica | 90 | 61.11% | 38.89% |
| Japonica Intermediate | 61 | 60.66% | 39.34% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 52.63% | 47.37% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126280422 | T->G | LOC_Os11g44260(LOC_Os11g44260.1) | Non-Synonymous SNP |