Detailed information of SNP:



SNP ID: sf1126280422(Gbrowse)

Chromosome: chr11

Position: 26280422
Major allele: T

Minor allele: G

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of G(minor allele)
All1326 51.21% 48.79%
All Indica732 57.24% 42.76%
All Japonica479 37.79% 62.21%
Aus63 71.43% 28.57%
Indica I355 57.18% 42.82%
Indica II186 63.98% 36.02%
Indica Intermediate191 50.79% 49.21%
Temperate Japonica328 27.13% 72.87%
Tropical Japonica90 61.11% 38.89%
Japonica Intermediate61 60.66% 39.34%
Group VI/Aromatic14 100.00% 0.00%
Intermediate38 52.63% 47.37%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1126280422 T->G LOC_Os11g44260(LOC_Os11g44260.1) Non-Synonymous SNP