Detailed information of SNP:
|
SNP ID:
sf1126286936(Gbrowse)
Chromosome: chr11 Position: 26286936 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1351 | 66.54% | 33.46% |
| All Indica | 745 | 46.17% | 53.83% |
| All Japonica | 491 | 95.93% | 4.07% |
| Aus | 62 | 75.81% | 24.19% |
| Indica I | 351 | 45.01% | 54.99% |
| Indica II | 196 | 50.00% | 50.00% |
| Indica Intermediate | 198 | 44.44% | 55.56% |
| Temperate Japonica | 330 | 97.27% | 2.73% |
| Tropical Japonica | 93 | 90.32% | 9.68% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126286936 | C->T | INTERGENIC | None |