Detailed information of SNP:
|
SNP ID:
sf1126287123(Gbrowse)
Chromosome: chr11 Position: 26287123 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 73.15% | 26.85% |
| All Indica | 786 | 57.51% | 42.49% |
| All Japonica | 495 | 96.16% | 3.84% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 368 | 59.51% | 40.49% |
| Indica II | 212 | 55.66% | 44.34% |
| Indica Intermediate | 206 | 55.83% | 44.17% |
| Temperate Japonica | 334 | 96.71% | 3.29% |
| Tropical Japonica | 93 | 93.55% | 6.45% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126287123 | C->T | INTERGENIC | None |