Detailed information of SNP:
|
SNP ID:
sf1126305046(Gbrowse)
Chromosome: chr11 Position: 26305046 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 72.58% | 27.42% |
| All Indica | 797 | 58.47% | 41.53% |
| All Japonica | 495 | 91.92% | 8.08% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 52.27% | 47.73% |
| Indica II | 211 | 69.67% | 30.33% |
| Indica Intermediate | 211 | 58.29% | 41.71% |
| Temperate Japonica | 333 | 90.69% | 9.31% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126305046 | A->G | INTERGENIC | None |