Detailed information of SNP:
|
SNP ID:
sf1126314482(Gbrowse)
Chromosome: chr11 Position: 26314482 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1401 | 71.23% | 28.77% |
| All Indica | 785 | 58.85% | 41.15% |
| All Japonica | 496 | 87.10% | 12.90% |
| Aus | 64 | 90.62% | 9.38% |
| Indica I | 375 | 55.73% | 44.27% |
| Indica II | 202 | 57.92% | 42.08% |
| Indica Intermediate | 208 | 65.38% | 34.62% |
| Temperate Japonica | 334 | 85.63% | 14.37% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126314482 | T->C | INTERGENIC | None |