Detailed information of SNP:
|
SNP ID:
sf1126322234(Gbrowse)
Chromosome: chr11 Position: 26322234 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 78.63% | 21.37% |
| All Indica | 798 | 66.17% | 33.83% |
| All Japonica | 497 | 96.78% | 3.22% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 60.00% | 40.00% |
| Indica II | 213 | 74.18% | 25.82% |
| Indica Intermediate | 210 | 69.05% | 30.95% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126322234 | C->T | INTERGENIC | None |