Detailed information of SNP:
|
SNP ID:
sf1126328806(Gbrowse)
Chromosome: chr11 Position: 26328806 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 95.77% | 4.23% |
| All Indica | 799 | 95.87% | 4.13% |
| All Japonica | 497 | 96.58% | 3.42% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126328806 | A->T | LOC_Os11g44340(LOC_Os11g44340.1) | INTRON |