Detailed information of SNP:
|
SNP ID:
sf1126349346(Gbrowse)
Chromosome: chr11 Position: 26349346 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1322 | 95.99% | 4.01% |
| All Indica | 759 | 96.57% | 3.43% |
| All Japonica | 446 | 93.95% | 6.05% |
| Aus | 64 | 100.00% | 0.00% |
| Indica I | 365 | 98.90% | 1.10% |
| Indica II | 193 | 100.00% | 0.00% |
| Indica Intermediate | 201 | 89.05% | 10.95% |
| Temperate Japonica | 294 | 94.90% | 5.10% |
| Tropical Japonica | 91 | 96.70% | 3.30% |
| Japonica Intermediate | 61 | 85.25% | 14.75% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126349346 | G->A | INTERGENIC | None |