Detailed information of SNP:
|
SNP ID:
sf1126365051(Gbrowse)
Chromosome: chr11 Position: 26365051 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 93.31% | 6.69% |
| All Indica | 799 | 92.12% | 7.88% |
| All Japonica | 497 | 96.78% | 3.22% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 80.09% | 19.91% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126365051 | A->C | INTERGENIC | None |