Detailed information of SNP:
|
SNP ID:
sf1126380036(Gbrowse)
Chromosome: chr11 Position: 26380036 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 89.14% | 10.86% |
| All Indica | 799 | 86.23% | 13.77% |
| All Japonica | 496 | 96.17% | 3.83% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 375 | 86.13% | 13.87% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 211 | 80.57% | 19.43% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 93 | 83.87% | 16.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126380036 | C->T | LOC_Os11g44390(LOC_Os11g44390.1) | Non-Synonymous SNP |