Detailed information of SNP:
|
SNP ID:
sf1126385025(Gbrowse)
Chromosome: chr11 Position: 26385025 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1353 | 63.27% | 36.73% |
| All Indica | 746 | 70.64% | 29.36% |
| All Japonica | 488 | 52.46% | 47.54% |
| Aus | 65 | 38.46% | 61.54% |
| Indica I | 345 | 71.59% | 28.41% |
| Indica II | 198 | 76.77% | 23.23% |
| Indica Intermediate | 203 | 63.05% | 36.95% |
| Temperate Japonica | 326 | 35.58% | 64.42% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 85.00% | 15.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126385025 | A->G | LOC_Os11g44400(LOC_Os11g44400.1) | INTRON |