Detailed information of SNP:
|
SNP ID:
sf1126392974(Gbrowse)
Chromosome: chr11 Position: 26392974 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1401 | 95.72% | 4.28% |
| All Indica | 784 | 96.17% | 3.83% |
| All Japonica | 496 | 96.98% | 3.02% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 372 | 99.73% | 0.27% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 199 | 93.47% | 6.53% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126392974 | T->C | INTERGENIC | None |