Detailed information of SNP:
|
SNP ID:
sf1126401824(Gbrowse)
Chromosome: chr11 Position: 26401824 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1382 | 95.59% | 4.41% |
| All Indica | 762 | 92.39% | 7.61% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 351 | 90.03% | 9.97% |
| Indica II | 207 | 94.69% | 5.31% |
| Indica Intermediate | 204 | 94.12% | 5.88% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126401824 | T->C | LOC_Os11g44415(LOC_Os11g44415.1) | UTR_3_PRIME |