Detailed information of SNP:
|
SNP ID:
sf1126403566(Gbrowse)
Chromosome: chr11 Position: 26403566 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1309 | 73.64% | 26.36% |
| All Indica | 693 | 54.26% | 45.74% |
| All Japonica | 494 | 98.79% | 1.21% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 354 | 49.44% | 50.56% |
| Indica II | 149 | 49.66% | 50.34% |
| Indica Intermediate | 190 | 66.84% | 33.16% |
| Temperate Japonica | 332 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 13 | 0.00% | 100.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126403566 | C->T | INTERGENIC | None |