Detailed information of SNP:
|
SNP ID:
sf1126404743(Gbrowse)
Chromosome: chr11 Position: 26404743 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 72.34% | 27.66% |
| All Indica | 798 | 78.45% | 21.55% |
| All Japonica | 497 | 58.55% | 41.45% |
| Aus | 66 | 89.39% | 10.61% |
| Indica I | 375 | 73.33% | 26.67% |
| Indica II | 213 | 80.75% | 19.25% |
| Indica Intermediate | 210 | 85.24% | 14.76% |
| Temperate Japonica | 335 | 45.37% | 54.63% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126404743 | G->A | INTERGENIC | None |