Detailed information of SNP:
|
SNP ID:
sf1126405331(Gbrowse)
Chromosome: chr11 Position: 26405331 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1386 | 76.84% | 23.16% |
| All Indica | 773 | 60.41% | 39.59% |
| All Japonica | 493 | 97.57% | 2.43% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 362 | 62.15% | 37.85% |
| Indica II | 205 | 43.90% | 56.10% |
| Indica Intermediate | 206 | 73.79% | 26.21% |
| Temperate Japonica | 332 | 96.69% | 3.31% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 11 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126405331 | G->T | INTERGENIC | None |