Detailed information of SNP:
|
SNP ID:
sf1126406678(Gbrowse)
Chromosome: chr11 Position: 26406678 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 65.51% | 34.49% |
| All Indica | 795 | 71.57% | 28.43% |
| All Japonica | 497 | 59.15% | 40.85% |
| Aus | 67 | 41.79% | 58.21% |
| Indica I | 375 | 77.33% | 22.67% |
| Indica II | 213 | 81.69% | 18.31% |
| Indica Intermediate | 207 | 50.72% | 49.28% |
| Temperate Japonica | 335 | 70.45% | 29.55% |
| Tropical Japonica | 94 | 41.49% | 58.51% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126406678 | G->A | LOC_Os11g44430(LOC_Os11g44430.1) | Non-Synonymous SNP |