Detailed information of SNP:
|
SNP ID:
sf1126406953(Gbrowse)
Chromosome: chr11 Position: 26406953 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1402 | 64.84% | 35.16% |
| All Indica | 792 | 71.09% | 28.91% |
| All Japonica | 496 | 57.86% | 42.14% |
| Aus | 61 | 37.70% | 62.30% |
| Indica I | 373 | 77.48% | 22.52% |
| Indica II | 213 | 81.22% | 18.78% |
| Indica Intermediate | 206 | 49.03% | 50.97% |
| Temperate Japonica | 334 | 69.46% | 30.54% |
| Tropical Japonica | 94 | 38.30% | 61.70% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 56.41% | 43.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126406953 | C->A | LOC_Os11g44430(LOC_Os11g44430.1) | Synonymous |