Detailed information of SNP:
|
SNP ID:
sf1126407083(Gbrowse)
Chromosome: chr11 Position: 26407083 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 70.76% | 29.24% |
| All Indica | 796 | 80.03% | 19.97% |
| All Japonica | 497 | 54.73% | 45.27% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 374 | 75.94% | 24.06% |
| Indica II | 212 | 81.60% | 18.40% |
| Indica Intermediate | 210 | 85.71% | 14.29% |
| Temperate Japonica | 335 | 45.67% | 54.33% |
| Tropical Japonica | 94 | 70.21% | 29.79% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126407083 | T->G | LOC_Os11g44430(LOC_Os11g44430.1) | Non-Synonymous SNP |