Detailed information of SNP:
|
SNP ID:
sf1126445309(Gbrowse)
Chromosome: chr11 Position: 26445309 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 72.91% | 27.09% |
| All Indica | 796 | 79.65% | 20.35% |
| All Japonica | 495 | 57.98% | 42.02% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 373 | 80.43% | 19.57% |
| Indica II | 212 | 88.21% | 11.79% |
| Indica Intermediate | 211 | 69.67% | 30.33% |
| Temperate Japonica | 335 | 44.18% | 55.82% |
| Tropical Japonica | 93 | 91.40% | 8.60% |
| Japonica Intermediate | 67 | 80.60% | 19.40% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126445309 | T->C | LOC_Os11g44500(LOC_Os11g44500.1) | Synonymous |