Detailed information of SNP:
|
SNP ID:
sf1126447713(Gbrowse)
Chromosome: chr11 Position: 26447713 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 81.32% | 18.68% |
| All Indica | 790 | 92.53% | 7.47% |
| All Japonica | 497 | 61.17% | 38.83% |
| Aus | 66 | 87.88% | 12.12% |
| Indica I | 367 | 93.46% | 6.54% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 210 | 86.67% | 13.33% |
| Temperate Japonica | 335 | 45.37% | 54.63% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126447713 | T->A | INTERGENIC | None |