Detailed information of SNP:
|
SNP ID:
sf1126464500(Gbrowse)
Chromosome: chr11 Position: 26464500 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1331 | 54.17% | 45.83% |
| All Indica | 724 | 53.45% | 46.55% |
| All Japonica | 485 | 54.85% | 45.15% |
| Aus | 66 | 51.52% | 48.48% |
| Indica I | 335 | 34.03% | 65.97% |
| Indica II | 202 | 79.21% | 20.79% |
| Indica Intermediate | 187 | 60.43% | 39.57% |
| Temperate Japonica | 325 | 63.69% | 36.31% |
| Tropical Japonica | 93 | 41.94% | 58.06% |
| Japonica Intermediate | 67 | 29.85% | 70.15% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126464500 | T->C | INTERGENIC | None |