Detailed information of SNP:
|
SNP ID:
sf1126479142(Gbrowse)
Chromosome: chr11 Position: 26479142 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 69.17% | 30.83% |
| All Indica | 798 | 78.95% | 21.05% |
| All Japonica | 494 | 56.07% | 43.93% |
| Aus | 67 | 52.24% | 47.76% |
| Indica I | 374 | 74.87% | 25.13% |
| Indica II | 213 | 81.22% | 18.78% |
| Indica Intermediate | 211 | 83.89% | 16.11% |
| Temperate Japonica | 335 | 65.97% | 34.03% |
| Tropical Japonica | 93 | 40.86% | 59.14% |
| Japonica Intermediate | 66 | 27.27% | 72.73% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126479142 | G->A | LOC_Os11g44570(LOC_Os11g44570.1) | Non-Synonymous SNP |