Detailed information of SNP:
|
SNP ID:
sf1126486337(Gbrowse)
Chromosome: chr11 Position: 26486337 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1398 | 99.21% | 0.79% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 477 | 98.11% | 1.89% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 323 | 98.76% | 1.24% |
| Tropical Japonica | 91 | 95.60% | 4.40% |
| Japonica Intermediate | 63 | 98.41% | 1.59% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126486337 | A->T | INTERGENIC | None |