Detailed information of SNP:
|
SNP ID:
sf1126490792(Gbrowse)
Chromosome: chr11 Position: 26490792 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 83.77% | 16.23% |
| All Indica | 798 | 76.19% | 23.81% |
| All Japonica | 497 | 96.58% | 3.42% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 375 | 89.87% | 10.13% |
| Indica II | 213 | 43.19% | 56.81% |
| Indica Intermediate | 210 | 85.24% | 14.76% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126490792 | C->T | LOC_Os11g44590(LOC_Os11g44590.1) | INTRON |