Detailed information of SNP:
|
SNP ID:
sf1126494425(Gbrowse)
Chromosome: chr11 Position: 26494425 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 53.73% | 46.27% |
| All Indica | 789 | 64.13% | 35.87% |
| All Japonica | 497 | 42.25% | 57.75% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 369 | 56.10% | 43.90% |
| Indica II | 212 | 69.34% | 30.66% |
| Indica Intermediate | 208 | 73.08% | 26.92% |
| Temperate Japonica | 335 | 48.96% | 51.04% |
| Tropical Japonica | 94 | 32.98% | 67.02% |
| Japonica Intermediate | 68 | 22.06% | 77.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 33.33% | 66.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126494425 | G->A | INTERGENIC | None |