Detailed information of SNP:
|
SNP ID:
sf1126502222(Gbrowse)
Chromosome: chr11 Position: 26502222 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 53.94% | 46.06% |
| All Indica | 790 | 67.09% | 32.91% |
| All Japonica | 494 | 39.47% | 60.53% |
| Aus | 67 | 28.36% | 71.64% |
| Indica I | 372 | 58.87% | 41.13% |
| Indica II | 210 | 72.38% | 27.62% |
| Indica Intermediate | 208 | 76.44% | 23.56% |
| Temperate Japonica | 332 | 46.99% | 53.01% |
| Tropical Japonica | 94 | 31.91% | 68.09% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 33.33% | 66.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126502222 | G->A | LOC_Os11g44600(LOC_Os11g44600.1) | Non-Synonymous SNP |