Detailed information of SNP:
|
SNP ID:
sf1126507881(Gbrowse)
Chromosome: chr11 Position: 26507881 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 73.25% | 26.75% |
| All Indica | 793 | 68.10% | 31.90% |
| All Japonica | 497 | 85.51% | 14.49% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 372 | 66.13% | 33.87% |
| Indica II | 212 | 78.30% | 21.70% |
| Indica Intermediate | 209 | 61.24% | 38.76% |
| Temperate Japonica | 335 | 91.04% | 8.96% |
| Tropical Japonica | 94 | 67.02% | 32.98% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126507881 | T->C | INTERGENIC | None |