Detailed information of SNP:
|
SNP ID:
sf1126509517(Gbrowse)
Chromosome: chr11 Position: 26509517 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 78.70% | 21.30% |
| All Indica | 798 | 81.33% | 18.67% |
| All Japonica | 497 | 75.25% | 24.75% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 375 | 85.33% | 14.67% |
| Indica II | 213 | 89.20% | 10.80% |
| Indica Intermediate | 210 | 66.19% | 33.81% |
| Temperate Japonica | 335 | 75.82% | 24.18% |
| Tropical Japonica | 94 | 68.09% | 31.91% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1126509517 | T->A | INTERGENIC | None |